Lecture 01: Introduction on Proteins

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Lecture 02: Introduction on Proteins (Contd.) and Sequence Database

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Lecture 03: Protein Data Bank

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Lecture 04: PDB Parsing

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Lecture 05: Molecular Visualization Tools

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Lecture 06: Representation and Data Structure

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Lecture 07: Digitization of a Molecule

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Lecture 08: Application to Protein Docking, FFT

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Lecture 09: Implementation Details

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Lecture 10: Hashing

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Lecture 11: Geometric Hashing

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Lecture 12: Geometric Hashing (Contd.)

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Lecture 13: Geometric Hashing (Contd.)

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Lecture 14: Molecular Surface

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Lecture 15: Genetic Algorithm (GA) for Surface Comparison

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Lecture 16: Monte Carlo (MC) Method

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Lecture 17: Monte Carlo Method (Contd.) and Random Number

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Lecture 18: Monte Carlo (MC) Method (Contd.)

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Lecture 19: Protein Folding

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Lecture 20: Protein Folding (Contd.) and Protein Design

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Lecture 21: Protein Energy Landscape

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Lecture 22: Protein Energy Landscape (Contd.), Limitation of MC

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Lecture 23: Replica Exchange Monte Carlo (REMC)

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Lecture 24: Ab Initio Protein Folding

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Lecture 25: Structure Alignment Measures

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Lecture 26: Dynamic Programming

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Lecture 27: Dynamic Programming (Contd.), Sequence Alignment

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Lecture 28: Dynamic Programming (Contd.), Position Specific Scoring Matrix (PSSM)

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Lecture 29: Structure Alignment

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Lecture 30: Structure Alignment (Contd.)

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Lecture 31: Structural Classification of Proteins (SCOP)

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Lecture 32: SCOP (Contd.), Symmetry in Proteins

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Lecture 33: Symmetry in Proteins

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Lecture 34: Discriminating Biological Protein Interfaces from Crystal Artifacts

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Lecture 35: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)

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Lecture 36: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)

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Lecture 37: Discriminating Biological Protein Interfaces from Crystal Artifacts (Contd.)

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Lecture 38: Symmetry-Based Protein Complex Modeling

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Lecture 39: Some Protein Docking Methods

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Lecture 40: Some Protein Docking Methods (Contd.)

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Lecture 41: Computational Protein Design (CPD)

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Lecture 42: Computational Protein Design (CPD) (Contd.)

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Lecture 43: Protein Design Energy Function

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Lecture 44: Protein Design Analysis

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Lecture 45: Application of Protein Design on Drug Design

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Lecture 46: RECM in Protein Design

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Lecture 47: Application of Protein Design on Drug Design

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Lecture 48: Application of Protein Design on Drug Design (Contd.), Protein Modification

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Lecture 49: Protein Modification (Contd.)

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Lecture 50: Protein Modification (Contd.)

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Lecture 51: Assigning Secondary Structure to Protein Sequence

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Lecture 52: Assigning Secondary Structure to Protein Sequence (Contd.)

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Lecture 53: Machine Learning to Predict the Secondary Structure from Amino Acid Sequences

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Lecture 54: Machine Learning to Predict the Secondary Structure from Amino Acid Sequences (Contd.)

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Lecture 55: Post Translational Modification

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Lecture 56: Predicting Protein Phosphorylation Sites

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Lecture 57: Predicting Protein Phosphorylation Sites (Contd.)

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Lecture 58: Summarizing Protein Folding and Protein Docking

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Lecture 59: Summarizing Protein Folding and Protein Docking (Contd.)

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Lecture 60: Summarizing Potein Engineering

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